U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX3339029: GSM2834604: sw-cbf23 24hr-cold rep1; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 20.6M spots, 1G bases, 464.8Mb downloads

Submitted by: NCBI (GEO)
Study: Potential role of the CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
PRJNA416120 • SRP122518 • All experiments • All runs
show Abstracthide Abstract
The two Arabidopsis ecotypes that are adapted to Italy and Sweden, respectively, showed different degree of freezing tolerance. By comparing the low temperature transcriptomes of the IT and SW ecotypes with the CBF pathway being knocked out, we showed the CBF pathway plays a significant role in natural variation of freezing tolerance. Overall design: Examination of mRNA levels in cbf CRISPR mutants in background of the Arabidospsis Italian and Swedish ecotype plants grown at warm, cold for 24h, and cold for 2 weeks.
Sample: sw-cbf23 24hr-cold rep1
SAMN07842296 • SRS2641105 • All experiments • All runs
Organism: Arabidopsis thaliana
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted using the RNeasy plant mini kit (Qiagen) RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2834604
Links:
Runs: 1 run, 20.6M spots, 1G bases, 464.8Mb
Run# of Spots# of BasesSizePublished
SRR623051520,620,5431G464.8Mb2018-07-31

ID:
4668158

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...